BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB016H07LP1|AL427083
(975 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1461 1572 0.0
3x_Contig18 478 e-135
3x_Contig1530 145 2e-34
>3x_Contig1461
Length = 5478
Score = 1572 bits (792), Expect = 0.0
Identities = 936/978 (95%), Gaps = 6/978 (0%)
Strand = Plus / Minus
Query: 1 gatcgtcagatcaagcctggggccctatacagcgcggtgacatgggtgtgtgcagcatcg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2557 gatcgtcagatcaagcctggggccctatacagcgcggtgacatgggtgtgtgcagcatcg 2498
Query: 61 aaagatgcyganangacgcctgaacagtctcgtcatggacatctagcgattccattggcg 120
|||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2497 aaagatgctg-caagacgcctgaacagtctcgtcatggacatctagcgattccattggcg 2439
Query: 121 agcagtggaggatttggtggattactagccaatggcaatccaaaccaaagaaaccatatt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2438 agcagtggaggatttggtggattactagccaatggcaatccaaaccaaagaaaccatatt 2379
Query: 181 tgggggaatgccttacagaatagccgggcgactttggttgtctgtgattctgtgagtgta 240
|||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||
Sbjct: 2378 tgggggaatgccttacagaatagcggggcgactttggttgtttgtgattttgtgagtgta 2319
Query: 241 acct-cctctttggccg-atgatattgaacgtt-ctgtttctgcgaaacatcggagcagt 297
|||| |||||||||||| ||||||||||||||| |||||| ||||||| || ||||||||
Sbjct: 2318 accttcctctttggccggatgatattgaacgtttctgtttttgcgaaaaattggagcagt 2259
Query: 298 gttcagtggaagtcggttagaggaaactcaaagagtgctatggcatggaggggttgtgat 357
||||||||||||| |||||||||||| | |||||||||||||| ||||||||||||||||
Sbjct: 2258 gttcagtggaagttggttagaggaaaattaaagagtgctatggaatggaggggttgtgat 2199
Query: 358 gatttgatagtgtaaaaactgttgaattgttgcttccgacgcgagtttggaaacttgttt 417
||||||||||||||||||||||||||||||||||| || |||||| |||||| ||||||
Sbjct: 2198 gatttgatagtgtaaaaactgttgaattgttgcttttgaagcgagtatggaaaattgttt 2139
Query: 418 ccttacttgcatttctaatcatgataaaatatctgcgacagttgatgcgggacttgacag 477
|||||||||||||| |||| |||||||||||| ||||| ||||||||||||| |||| ||
Sbjct: 2138 ccttacttgcatttataataatgataaaatatatgcgaaagttgatgcgggagttgagag 2079
Query: 478 catttgttgttaagacttgtggatactgcttcataagatagttatctggttgatcctgcc 537
||||||||||||||| |||||||||||||||||||||||| |||| ||||||||| |||
Sbjct: 2078 catttgttgttaagaattgtggatactgcttcataagatatttatttggttgatcttgcg 2019
Query: 538 agtagtcatatgcttgtctcaaagattaagccatgcatgtctaagtataagcaatttata 597
|||||| |||||||||| | ||||||||||| |||||||| |||||||||||||||||||
Sbjct: 2018 agtagttatatgcttgtataaaagattaagcaatgcatgtataagtataagcaatttata 1959
Query: 598 cagtgaaactgcgaatggctcattaaatcagttatcgtttatttgatagttcctttacta 657
|||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 1958 cagtgaaa-tgcgaatgggtcattaaatcagttatcgtttatttgatagttcctttacta 1900
Query: 658 catggatatctgtggtaattctagagctaatacatgcttaaaatctcgaccctttggaag 717
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1899 catggatatctgtggtaattctagagctaatacatgcttaaaatctcgaccctttggaag 1840
Query: 718 agatgtatttattagataaaaaatcaatgtcttcggactccttgatgattcataataact 777
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1839 agatgtatttattagataaaaaatcaatgtcttcggactccttgatgattcataataact 1780
Query: 778 tttcgaatcgcatggccttgtgctggcgatggttcattcaaatttctgccctatcaactt 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1779 tttcgaatcgcatggccttgtgctggcgatggttcattcaaatttctgccctatcaactt 1720
Query: 838 tcgatggtaggatagtggcctaccatggtttcaacgggtaacggggaataagggttcgat 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1719 tcgatggtaggatagtggcctaccatggtttcaacgggtaacggggaataagggttcgat 1660
Query: 898 tccggagagggagcctgagaaacggctaccacatccaaaggaaggcagcaggsgcgcaaa 957
|||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||
Sbjct: 1659 tccggagagggagcctgagaaacggctaccacatcc-aaggaaggcagcaggcgcgcaaa 1601
Query: 958 ttacccaatcctaattca 975
||||||||||||||||||
Sbjct: 1600 ttacccaatcctaattca 1583
>3x_Contig18
Length = 1116
Score = 478 bits (241), Expect = e-135
Identities = 248/249 (99%), Gaps = 1/249 (0%)
Strand = Plus / Plus
Query: 594 tatacagtgaaactgcgaatggctcattaaatcagttatcgtttatttgatagttccttt 653
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 39 tatacagtgaaa-tgcgaatggctcattaaatcagttatcgtttatttgatagttccttt 97
Query: 654 actacatggatatctgtggtaattctagagctaatacatgcttaaaatctcgaccctttg 713
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 98 actacatggatatctgtggtaattctagagctaatacatgcttaaaatctcgaccctttg 157
Query: 714 gaagagatgtatttattagataaaaaatcaatgtcttcggactccttgatgattcataat 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 158 gaagagatgtatttattagataaaaaatcaatgtcttcggactccttgatgattcataat 217
Query: 774 aacttttcgaatcgcatggccttgtgctggcgatggttcattcaaatttctgccctatca 833
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 218 aacttttcgaatcgcatggccttgtgctggcgatggttcattcaaatttctgccctatca 277
Query: 834 actttcgat 842
|||||||||
Sbjct: 278 actttcgat 286
>3x_Contig1530
Length = 6216
Score = 145 bits (73), Expect = 2e-34
Identities = 81/83 (97%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 893 tcgattccggagagggagcctgagaaacggctaccacatccaaaggaaggcagcaggsgc 952
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct: 14 tcgattccggagagggagcctgagaaacggctaccacatcc-aaggaaggcagcaggcgc 72
Query: 953 gcaaattacccaatcctaattca 975
|||||||||||||||||||||||
Sbjct: 73 gcaaattacccaatcctaattca 95
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.711 1.31
Gapped
Lambda K H
1.38 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5831
Number of Sequences: 1807
Number of extensions: 5831
Number of successful extensions: 36
Number of sequences better than 1.0e-20: 3
length of query: 975
length of database: 10,358,551
effective HSP length: 16
effective length of query: 959
effective length of database: 10,329,639
effective search space: 9906123801
effective search space used: 9906123801
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.8 bits)
S1: 12 (24.3 bits)
S2: 50 (99.7 bits)